3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11735

Details:

PFam ID : PF11735

PFam Domain Description : Cryptococcal mannosyltransferase 1

Number of Sequence in 50% Dataset : 49

Number of Sequence in Full Dataset : 167

Average sequence length: 229.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11735	E9APC6_LEIME_300_620	85.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11735	E3KNL9_PUCGT_178_452	100

Sequence based PCA Plot of the family - PF11735 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=112 Length=8
Motif2 Start=48 Length=8
Motif3 Start=218 Length=8
Motif4 Start=150 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay