3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11734

Details:

PFam ID : PF11734

PFam Domain Description : TilS substrate C-terminal domain

Number of Sequence in 50% Dataset : 94

Number of Sequence in Full Dataset : 742

Average sequence length: 71.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11734	A0BH94_PARTE_570_647	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11734	B9TKB8_RICCO_192_271	100

Sequence based PCA Plot of the family - PF11734 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=47 Length=8
Motif2 Start=29 Length=17
Motif3 Start=3 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay