3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11733

Details:

PFam ID : PF11733

PFam Domain Description : Non-capsid protein NP1

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 9

Average sequence length: 81

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11733	A0BH94_PARTE_570_647	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11733	VNCN_PAVBP_13_93	100

Sequence based PCA Plot of the family - PF11733 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay