3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11732

Details:

PFam ID : PF11732

PFam Domain Description : Transcription- and export-related complex subunit

Number of Sequence in 50% Dataset : 19

Number of Sequence in Full Dataset : 86

Average sequence length: 74.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11732	A0BH94_PARTE_570_647	55.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11732	D8LD24_ECTSI_995_1072	100

Sequence based PCA Plot of the family - PF11732 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=2 Length=36

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay