3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11728

Details:

PFam ID : PF11728

PFam Domain Description : DUF939 C-terminal domain

Number of Sequence in 50% Dataset : 41

Number of Sequence in Full Dataset : 115

Average sequence length: 166.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11728	C0GHW3_9FIRM_150_324	97.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11728	D3APZ6_9CLOT_146_321	100

Sequence based PCA Plot of the family - PF11728 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=167 Length=8
Motif2 Start=145 Length=20
Motif3 Start=80 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay