3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11723

Details:

PFam ID : PF11723

PFam Domain Description : Homotrimeric ring hydroxylase

Number of Sequence in 50% Dataset : 9

Number of Sequence in Full Dataset : 29

Average sequence length: 208.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11723	A1SIL1_NOCSJ_147_232	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11723	Q0RCN4_FRAAA_149_407	100

Sequence based PCA Plot of the family - PF11723 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=6 Length=21
Motif2 Start=35 Length=21

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay