3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11722

Details:

PFam ID : PF11722

PFam Domain Description : CCCH zinc finger in TRM13 protein

Number of Sequence in 50% Dataset : 10

Number of Sequence in Full Dataset : 79

Average sequence length: 30.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11722	A4RSM0_OSTLU_23_53	44.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11722	A4RSM0_OSTLU_23_53	92.3

Sequence based PCA Plot of the family - PF11722 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=4 Length=8
Motif2 Start=23 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay