3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11721

Details:

PFam ID : PF11721

PFam Domain Description : Di-glucose binding within endoplasmic reticulum

Number of Sequence in 50% Dataset : 123

Number of Sequence in Full Dataset : 395

Average sequence length: 158.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11721	D7L8V5_ARALL_16_120	95.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11721	Q94G99_SOLLC_19_203	99.4

Sequence based PCA Plot of the family - PF11721 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=68 Length=8
Motif2 Start=82 Length=8
Motif3 Start=12 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay