3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11719

Details:

PFam ID : PF11719

PFam Domain Description : DNA replication and checkpoint protein

Number of Sequence in 50% Dataset : 63

Number of Sequence in Full Dataset : 98

Average sequence length: 324.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11719	A7TQG3_VANPO_6_386	85.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11719	A6S4V8_BOTFB_13_250	100

Sequence based PCA Plot of the family - PF11719 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=445 Length=8
Motif2 Start=429 Length=8
Motif3 Start=8 Length=8
Motif4 Start=105 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay