3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11716

Details:

PFam ID : PF11716

PFam Domain Description : Mycothiol maleylpyruvate isomerase N-terminal domain

Number of Sequence in 50% Dataset : 316

Number of Sequence in Full Dataset : 939

Average sequence length: 129.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11716	A3PVP6_MYCSJ_7_206	98.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11716	E1VT95_ARTAR_37_172	99.8

Sequence based PCA Plot of the family - PF11716 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=59 Length=8
Motif4 Start=77 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay