3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11715

Details:

PFam ID : PF11715

PFam Domain Description : Nucleoporin Nup120/160

Number of Sequence in 50% Dataset : 97

Number of Sequence in Full Dataset : 156

Average sequence length: 394.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11715	C3Z1R7_BRAFL_28_353	95.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11715	D5G9C9_TUBMM_37_605	97.4

Sequence based PCA Plot of the family - PF11715 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=84 Length=8
Motif2 Start=73 Length=8
Motif3 Start=152 Length=8
Motif4 Start=16 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay