3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11712

Details:

PFam ID : PF11712

PFam Domain Description : Endoplasmic reticulum-based factor for assembly of V-ATPase

Number of Sequence in 50% Dataset : 46

Number of Sequence in Full Dataset : 131

Average sequence length: 137.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11712	Q5CSD1_CRYPV_64_196	77.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11712	Q19259_CAEEL_15_196	100

Sequence based PCA Plot of the family - PF11712 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=6 Length=36

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay