3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11711

Details:

PFam ID : PF11711

PFam Domain Description : Inner membrane protein import complex subunit Tim54

Number of Sequence in 50% Dataset : 31

Number of Sequence in Full Dataset : 69

Average sequence length: 352.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11711	A6QVU3_AJECN_281_354	90

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11711	TIM54_YARLI_25_562	100

Sequence based PCA Plot of the family - PF11711 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=4 Length=36

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay