3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11706

Details:

PFam ID : PF11706

PFam Domain Description : CGNR zinc finger

Number of Sequence in 50% Dataset : 13

Number of Sequence in Full Dataset : 357

Average sequence length: 42.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11706	B0MB38_9FIRM_351_393	58.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11706	B0MB38_9FIRM_351_393	98.5

Sequence based PCA Plot of the family - PF11706 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=23 Length=20
Motif2 Start=3 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay