3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11705

Details:

PFam ID : PF11705

PFam Domain Description : DNA-directed RNA polymerase III subunit Rpc31

Number of Sequence in 50% Dataset : 56

Number of Sequence in Full Dataset : 143

Average sequence length: 209.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11705	E0CX67_MOUSE_1_83	67.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11705	F0XCB9_9PEZI_1_284	100

Sequence based PCA Plot of the family - PF11705 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=67 Length=8
Motif4 Start=254 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay