3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11704

Details:

PFam ID : PF11704

PFam Domain Description : Vesicle coat protein involved in Golgi to plasma membrane transport

Number of Sequence in 50% Dataset : 40

Number of Sequence in Full Dataset : 102

Average sequence length: 168.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11704	A8XCN5_CAEBR_193_305	89.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11704	B2W8Y2_PYRTR_212_415	100

Sequence based PCA Plot of the family - PF11704 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=182 Length=8
Motif2 Start=23 Length=8
Motif3 Start=96 Length=8
Motif4 Start=194 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay