3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11701

Details:

PFam ID : PF11701

PFam Domain Description : Myosin-binding striated muscle assembly central

Number of Sequence in 50% Dataset : 36

Number of Sequence in Full Dataset : 94

Average sequence length: 177.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11701	RNG3_SCHPO_177_322	14.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11701	D5GKL3_TUBMM_225_375	97.8

Sequence based PCA Plot of the family - PF11701 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=89 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay