3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11700

Details:

PFam ID : PF11700

PFam Domain Description : Vacuole effluxer Atg22 like

Number of Sequence in 50% Dataset : 141

Number of Sequence in Full Dataset : 591

Average sequence length: 410.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11700	F2UPH4_9EUKA_51_127	97.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11700	Q75EJ9_ASHGO_58_558	100

Sequence based PCA Plot of the family - PF11700 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=16 Length=8
Motif2 Start=90 Length=8
Motif3 Start=7 Length=8
Motif4 Start=450 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay