3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11699

Details:

PFam ID : PF11699

PFam Domain Description : Mif2/CENP-C like

Number of Sequence in 50% Dataset : 35

Number of Sequence in Full Dataset : 89

Average sequence length: 80.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11699	A7EEM1_SCLS1_342_415	58.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11699	Q6C048_YARLI_735_822	100

Sequence based PCA Plot of the family - PF11699 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=51 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay