3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11695

Details:

PFam ID : PF11695

PFam Domain Description : Domain of unknown function (DUF3291)

Number of Sequence in 50% Dataset : 27

Number of Sequence in Full Dataset : 101

Average sequence length: 129.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11695	B5HAB3_STRPR_44_135	23.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11695	E8W8M8_STRFA_4_165	100

Sequence based PCA Plot of the family - PF11695 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=79 Length=8
Motif4 Start=29 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay