3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11671

Details:

PFam ID : PF11671

PFam Domain Description : Complementary sex determiner protein

Number of Sequence in 50% Dataset : 5

Number of Sequence in Full Dataset : 97

Average sequence length: 132.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11671	D9MZC7_APIME_96_147	50

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11671	E1ZWU2_9HYME_358_500	94.7

Sequence based PCA Plot of the family - PF11671 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=18
Motif2 Start=131 Length=8
Motif3 Start=80 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay