3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11670

Details:

PFam ID : PF11670

PFam Domain Description : Major surface protein 1a (MSP1a)

Number of Sequence in 50% Dataset : 5

Number of Sequence in Full Dataset : 38

Average sequence length: 94.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11670	A7SPN1_NEMVE_1_53	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11670	A6MD67_ANAMA_1_62	94.5

Sequence based PCA Plot of the family - PF11670 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay