3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11657

Details:

PFam ID : PF11657

PFam Domain Description : Transcriptional activator TraM

Number of Sequence in 50% Dataset : 15

Number of Sequence in Full Dataset : 33

Average sequence length: 136.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11657	Q3R3I2_XYLFA_2_137	42.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11657	A9L6P8_SHEB9_5_152	100

Sequence based PCA Plot of the family - PF11657 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay