3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11649

Details:

PFam ID : PF11649

PFam Domain Description : Virus neck protein

Number of Sequence in 50% Dataset : 13

Number of Sequence in Full Dataset : 41

Average sequence length: 232.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11649	C9DG21_9CAUD_1_218	83.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11649	C9DG21_9CAUD_1_218	100

Sequence based PCA Plot of the family - PF11649 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=139 Length=8
Motif4 Start=117 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay