3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11648

Details:

PFam ID : PF11648

PFam Domain Description : C-terminal domain of RIG-I

Number of Sequence in 50% Dataset : 25

Number of Sequence in Full Dataset : 63

Average sequence length: 112.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11648	D6BM98_CTEID_853_935	95.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11648	F1KYK6_ASCSU_258_390	100

Sequence based PCA Plot of the family - PF11648 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=37

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay