3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11647

Details:

PFam ID : PF11647

PFam Domain Description : C-terminal region of Pasteurella multocida toxin residues 569-1285

Number of Sequence in 50% Dataset : 7

Number of Sequence in Full Dataset : 37

Average sequence length: 63.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11647	C3J7P8_9PORP_21_212	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11647	C2LII7_PROMI_878_947	55

Sequence based PCA Plot of the family - PF11647 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=18
Motif2 Start=1 Length=8
Motif3 Start=61 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay