3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11638

Details:

PFam ID : PF11638

PFam Domain Description : DnaA N-terminal domain

Number of Sequence in 50% Dataset : 195

Number of Sequence in Full Dataset : 830

Average sequence length: 63.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11638	E5VVR8_9FIRM_6_55	95.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11638	D7N8B7_9FIRM_6_85	99.8

Sequence based PCA Plot of the family - PF11638 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=56 Length=8
Motif3 Start=45 Length=8
Motif4 Start=21 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay