3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11635

Details:

PFam ID : PF11635

PFam Domain Description : Mediator complex subunit 16

Number of Sequence in 50% Dataset : 66

Number of Sequence in Full Dataset : 106

Average sequence length: 531.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11635	B8LW67_TALSN_140_909	67.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11635	A2QQG8_ASPNC_140_514	100

Sequence based PCA Plot of the family - PF11635 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=312 Length=8
Motif3 Start=48 Length=8
Motif4 Start=782 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay