3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11629

Details:

PFam ID : PF11629

PFam Domain Description : C terminal SARAH domain of Mst1

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 32

Average sequence length: 47.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11629	Q4T6S2_TETNG_6_33	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11629	E9GI23_DAPPU_441_486	100

Sequence based PCA Plot of the family - PF11629 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=17 Length=8
Motif3 Start=32 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay