3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11628 Details: PFam ID : PF11628 PFam Domain Description : T-cell surface glycoprotein CD3 zeta chain Number of Sequence in 50% Dataset : 2 Number of Sequence in Full Dataset : 22 Average sequence length: 31.2 Pairwise Identity of Sequence in 50% Dataset : 31.3 FASSM Based Coverage Results:Pfam IDBest ProfileCoverage of Best ProfilePF11628Q4T6S2_TETNG_6_33100 HMMER Based Coverage Results:Pfam IDBest ProfileCoverage of Best ProfilePF11628Q4T6S2_TETNG_6_33100 Sequence based PCA Plot of the family - PF11628 : BRP of Green color is by FASSM and of Red color is by HMMER PSIMOT-Motifs Extracted using PSIMOT:There are 3 motifsMotif1 Start=20 Length=8Motif2 Start=11 Length=8Motif3 Start=2 Length=8 Download PSSM/HMM Models/Alignment:Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay
PFam ID : PF11628
PFam Domain Description : T-cell surface glycoprotein CD3 zeta chain
Number of Sequence in 50% Dataset : 2
Number of Sequence in Full Dataset : 22
Average sequence length: 31.2
Pairwise Identity of Sequence in 50% Dataset : 31.3
BRP of Green color is by FASSM and of Red color is by HMMER