3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11621

Details:

PFam ID : PF11621

PFam Domain Description : C3 binding domain 4 of IgG-bind protein SBI

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 4

Average sequence length: 51.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11621	YQ38_CAEEL_807_915	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11621	E5TCC4_STAAU_198_266	100

Sequence based PCA Plot of the family - PF11621 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay