3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11620

Details:

PFam ID : PF11620

PFam Domain Description : GA-binding protein alpha chain

Number of Sequence in 50% Dataset : 6

Number of Sequence in Full Dataset : 22

Average sequence length: 81.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11620	YQ38_CAEEL_807_915	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11620	C4QKE5_SCHMA_49_137	100

Sequence based PCA Plot of the family - PF11620 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=11
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay