3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11616

Details:

PFam ID : PF11616

PFam Domain Description : WD repeat binding protein EZH2

Number of Sequence in 50% Dataset : 2

Number of Sequence in Full Dataset : 13

Average sequence length: 27.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11616	D4H8G2_DENA2_282_399	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11616	Q5TKR5_ORYLA_38_67	100

Sequence based PCA Plot of the family - PF11616 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay