3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11614

Details:

PFam ID : PF11614

PFam Domain Description : Ubp3 associated protein Bre5

Number of Sequence in 50% Dataset : 181

Number of Sequence in Full Dataset : 485

Average sequence length: 117.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11614	D4H8G2_DENA2_282_399	70.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11614	D7DJS8_METS0_358_504	100

Sequence based PCA Plot of the family - PF11614 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=20 Length=8
Motif2 Start=11 Length=8
Motif3 Start=45 Length=8
Motif4 Start=2 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay