3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11608

Details:

PFam ID : PF11608

PFam Domain Description : Limkain b1

Number of Sequence in 50% Dataset : 5

Number of Sequence in Full Dataset : 17

Average sequence length: 78.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11608	E0VN41_PEDHC_236_297	25

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11608	E9HB49_DAPPU_186_272	100

Sequence based PCA Plot of the family - PF11608 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=35 Length=8
Motif2 Start=1 Length=18
Motif3 Start=26 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay