3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11606

Details:

PFam ID : PF11606

PFam Domain Description : Family 31 carbohydrate binding protein

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 6

Average sequence length: 76.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11606	E4ZIF9_LEPMC_91_156	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11606	Q8VUT2_9PSED_465_556	100

Sequence based PCA Plot of the family - PF11606 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=18
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay