3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11605

Details:

PFam ID : PF11605

PFam Domain Description : Vacuolar protein sorting protein 36 Vps36

Number of Sequence in 50% Dataset : 26

Number of Sequence in Full Dataset : 100

Average sequence length: 86.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11605	E4ZIF9_LEPMC_91_156	88

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11605	Q5TPR5_ANOGA_2_94	100

Sequence based PCA Plot of the family - PF11605 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=92 Length=8
Motif4 Start=49 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay