3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11604

Details:

PFam ID : PF11604

PFam Domain Description : Copper binding periplasmic protein CusF

Number of Sequence in 50% Dataset : 60

Number of Sequence in Full Dataset : 484

Average sequence length: 67.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11604	B1G602_9BURK_48_92	88.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11604	Q2S6C1_SALRD_1_43	100

Sequence based PCA Plot of the family - PF11604 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=26 Length=8
Motif2 Start=17 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay