3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11600

Details:

PFam ID : PF11600

PFam Domain Description : Chromatin assembly factor 1 p150 subunit

Number of Sequence in 50% Dataset : 2

Number of Sequence in Full Dataset : 7

Average sequence length: 24.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11600	D3EHE3_GEOS4_1_244	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11600	F1S7L7_PIG_230_256	100

Sequence based PCA Plot of the family - PF11600 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay