3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11598

Details:

PFam ID : PF11598

PFam Domain Description : Cartilage oligomeric matrix protein

Number of Sequence in 50% Dataset : 7

Number of Sequence in Full Dataset : 26

Average sequence length: 44.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11598	Q4SJJ0_TETNG_11_134	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11598	A9ULT0_DANRE_212_254	100

Sequence based PCA Plot of the family - PF11598 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay