3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11597

Details:

PFam ID : PF11597

PFam Domain Description : Mediator complex subunit 13 N-terminal

Number of Sequence in 50% Dataset : 42

Number of Sequence in Full Dataset : 89

Average sequence length: 317.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11597	Q4SJJ0_TETNG_11_134	80.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11597	C4YNA9_CANAW_5_78	90.9

Sequence based PCA Plot of the family - PF11597 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=126 Length=8
Motif2 Start=178 Length=8
Motif3 Start=49 Length=8
Motif4 Start=233 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay