3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11591

Details:

PFam ID : PF11591

PFam Domain Description : Ferredoxin chloroplastic transit peptide

Number of Sequence in 50% Dataset : 2

Number of Sequence in Full Dataset : 4

Average sequence length: 25

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11591	E2NCW5_9BACE_21_128	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11591	A8IV40_CHLRE_1_32	100

Sequence based PCA Plot of the family - PF11591 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay