3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11587

Details:

PFam ID : PF11587

PFam Domain Description : Major prion protein bPrPp - N terminal

Number of Sequence in 50% Dataset : 7

Number of Sequence in Full Dataset : 38

Average sequence length: 25.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11587	Q8K1W5_CASCN_1_15	33.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11587	P97895_MESAU_1_17	100

Sequence based PCA Plot of the family - PF11587 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay