3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11581

Details:

PFam ID : PF11581

PFam Domain Description : Antagonist of EGFR signalling, Argos

Number of Sequence in 50% Dataset : 5

Number of Sequence in Full Dataset : 17

Average sequence length: 74.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11581	B7PF30_IXOSC_1_87	75

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11581	E0VSE1_PEDHC_10_51	68

Sequence based PCA Plot of the family - PF11581 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=18
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay