3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11575

Details:

PFam ID : PF11575

PFam Domain Description : Acidic fibroblast growth factor binding (FIBP)

Number of Sequence in 50% Dataset : 5

Number of Sequence in Full Dataset : 154

Average sequence length: 22.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11575	Q2B6S6_9BACI_215_236	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11575	C5D2S2_GEOSW_218_237	81

Sequence based PCA Plot of the family - PF11575 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=11
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay