3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11573

Details:

PFam ID : PF11573

PFam Domain Description : Mediator complex subunit 23

Number of Sequence in 50% Dataset : 37

Number of Sequence in Full Dataset : 57

Average sequence length: 658.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11573	B9HJE9_POPTR_5_594	66.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11573	C3ZD36_BRAFL_356_755	100

Sequence based PCA Plot of the family - PF11573 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1038 Length=8
Motif2 Start=78 Length=8
Motif3 Start=318 Length=8
Motif4 Start=1251 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay