3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11559

Details:

PFam ID : PF11559

PFam Domain Description : Afadin- and alpha -actinin-Binding

Number of Sequence in 50% Dataset : 49

Number of Sequence in Full Dataset : 100

Average sequence length: 142.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11559	B6K3D2_SCHJY_14_162	97.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11559	A7S136_NEMVE_200_354	100

Sequence based PCA Plot of the family - PF11559 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=27
Motif2 Start=132 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay