3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11556

Details:

PFam ID : PF11556

PFam Domain Description : Erythrocyte binding antigen 175

Number of Sequence in 50% Dataset : 4

Number of Sequence in Full Dataset : 22

Average sequence length: 76.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11556	E6ZFD6_DICLA_316_344	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11556	Q9U4X0_PLAFA_2553_2634	100

Sequence based PCA Plot of the family - PF11556 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=74 Length=8
Motif4 Start=49 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay