3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11555

Details:

PFam ID : PF11555

PFam Domain Description : EGFR receptor inhibitor Mig-6

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 15

Average sequence length: 59.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11555	E6ZFD6_DICLA_316_344	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11555	Q4RX44_TETNG_326_381	92.8

Sequence based PCA Plot of the family - PF11555 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=2 Length=27

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay