3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11551

Details:

PFam ID : PF11551

PFam Domain Description : Outer membrane protein Omp28

Number of Sequence in 50% Dataset : 33

Number of Sequence in Full Dataset : 50

Average sequence length: 172.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11551	B2RGZ6_PORG3_113_290	84.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11551	F0NYX5_WEEVC_161_373	100

Sequence based PCA Plot of the family - PF11551 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=107 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay